Respiratory Deficient Candidates in the Yeast Deletion and Mitochondria (YDPM) Database
The number of ORFs found in the set = 171
ORF Gene Chromosome Start Coord Stop Coord CYGD description SGD description respiratory deficient
YBL002W HTB2 II 236454 236849 histone H2B.2 yes
YBL003C HTA2 II 235754 235356 histone H2A.2 yes
YBL022C PIM1 II 181237 177836 ATP-dependent protease, mitochondrial heat shock response yes
YBL030C PET9 II 163959 163003 ADP/ATP carrier protein (MCF) ATP/ADP exchange yes
YBL080C PET112 II 74689 73064 required to maintain rho+ mitochondrial DNA yes
YBL099W ATP1 II 37045 38682 F1F0-ATPase complex, F1 alpha subunit ATP synthesis coupled proton transport yes
YBR037C SCO1 II 311410 310523 involved in stabilization of COX1P and COX2P protein complex assembly yes
YBR039W ATP3 II 315534 316469 F1F0-ATPase complex, F1 gamma subunit ATP synthesis coupled proton transport yes
YBR044C TCM62 II 326019 324298 chaperone required for assembly of mitochondrial succinate dehydrogenase protein complex assembly yes
YBR127C VMA2 II 492780 491227 H+-ATPase V1 domain 60 KD subunit, vacuolar vacuolar acidification yes
YBR143C SUP45 II 532140 530827 translational release factor protein synthesis termination yes
YBR146W MRPS9 II 535218 536054 ribosomal protein S9 precursor, mitochondrial protein biosynthesis yes
YBR179C FZO1 II 589072 586505 required for biogenesis of mitochondria mitochondrion organization and biogenesis yes
YBR185C MBA1 II 599917 599081 respiratory chain assembly protein respiration yes
YBR192W RIM2 II 607610 608743 mitochondrial carrier protein (MCF) transport yes
YCR003W MRPL32 III 118614 119165 ribosomal protein YmL32. mitochondrial protein biosynthesis yes
YCR009C RVS161 III 131536 130739 similarity to human amphiphysin and RVS167P endocytosis yes
YCR020C PET18 III 154653 154006 similarity to regulatory protein yes
YCR024C III 162214 160736 asn-tRNA synthetase, mitochondrial protein biosynthesis yes
YCR046C IMG1 III 210415 209906 ribosomal protein, mitochondrial protein biosynthesis yes
YCR071C IMG2 III 240535 240095 required for Integrity of Mitochondrial Genome yes
YDL004W ATP16 IV 443025 443507 F1F0-ATPase complex, F1 delta subunit ATP synthesis coupled proton transport yes
YDL006W PTC1 IV 439905 440750 protein serine/threonine phosphatase 2c tRNA splicing yes
YDL045W-A MRP10 IV 372244 372531 mitochondrial ribosomal protein protein biosynthesis yes
YDL120W YFH1 IV 245922 246446 regulates mitochondrial iron accumulation yes
YDL202W MRPL11 IV 98476 99225 ribosomal protein of the large subunit, mitochondrial protein biosynthesis yes
YDR079W PET100 IV 603058 603393 cytochrome-c oxidase assembly protein cytochrome c oxidase biogenesis yes
YDR172W SUP35 IV 808317 810374 eukaryotic peptide chain release factor GTP-binding subunit protein synthesis termination yes
YDR178W SDH4 IV 817943 818488 succinate dehydrogenase membrane anchor subunit for SDH2P tricarboxylic acid cycle yes
YDR225W HTA1 IV 915521 915919 histone H2A yes
YDR298C ATP5 IV 1058805 1058167 F1F0-ATPase complex, OSCP subunit ATP synthesis coupled proton transport yes
YDR322C-A TIM11 IV 1112285 1111995 subunit E of the dimeric form of mitochondrial F1F0-ATPase ATP synthesis coupled proton transport yes
YDR337W MRPS28 IV 1146309 1147169 ribosomal protein of the small subunit, mitochondrial protein biosynthesis yes
YDR347W MRP1 IV 1169168 1170133 ribosomal protein of the small subunit, mitochondrial protein biosynthesis yes
YDR375C BCS1 IV 1226525 1225155 mitochondrial protein of the CDC48/PAS1/SEC18 (AAA) family of ATPases respiration yes
YDR377W ATP17 IV 1228600 1228905 ATP synthase complex, subunit f ATP synthesis coupled proton transport yes
YDR405W MRP20 IV 1277635 1278426 ribosomal protein of the large subunit, mitochondrial protein biosynthesis yes
YDR456W NHX1 IV 1367474 1369375 NA+-H+ antiporter vacuolar acidification yes
YDR529C QCR7 IV 1496551 1496168 ubiquinol--cytochrome-c reductase subunit 7 yes
YEL024W RIP1 V 107260 107907 ubiquinol--cytochrome-c reductase iron-sulfur protein precursor yes
YEL050C RML2 V 60851 59670 ribosomal L2 protein, mitochondrial protein biosynthesis yes
YEL059C-A SOM1 V 42624 42400 required for mitochondrial IMP1 peptidase function yes
YER014W HEM14 V 182599 184218 protoporphyrinogen oxidase, mitochondrial yes
YER017C AFG3 V 191787 189502 protease of the SEC18/CDC48/PAS1 family of ATPases (AAA) protein complex assembly yes
YER058W PET117 V 271766 272089 cytochrome c oxidase assembly factor cytochrome c oxidase biogenesis yes
YER141W COX15 V 453454 454914 cytochrome oxidase assembly factor cytochrome c oxidase biogenesis yes
YER153C PET122 V 474800 474036 translational activator of cytochrome c oxidase subunit III protein biosynthesis yes
YER154W OXA1 V 475015 476223 cytochrome oxidase biogenesis protein mitochondrial translocation yes
YER178W PDA1 V 546743 548074 pyruvate dehydrogenase (lipoamide) alpha chain precursor yes
YFL016C MDJ1 VI 106230 104695 heat shock protein - chaperone protein folding yes
YFR033C QCR6 VI 224756 224313 ubiquinol--cytochrome-c reductase 17K protein yes
YGL018C JAC1 VII 459660 459106 molecular chaperone aerobic respiration yes
YGL040C HEM2 VII 420552 419524 porphobilinogen synthase yes
YGL119W ABC1 VII 284443 285948 ubiquinol--cytochrome-c reductase complex assembly protein complex III (ubiquinone to cytochrome c) yes
YGL191W COX13 VII 144812 145201 cytochrome-c oxidase chain VIa yes
YGR062C COX18 VII 617272 616322 required for activity of mitochondrial cytochrome oxidase cytochrome c oxidase biogenesis yes
YGR082W TOM20 VII 644038 644589 mitochondrial outer membrane import receptor subunit, 20 kD mitochondrial translocation yes
YGR112W SHY1 VII 717352 718521 SURF homologue protein respiration yes
YGR174C CBP4 VII 846400 845888 ubiquinol--cytochrome-c reductase assembly factor protein complex assembly yes
YGR180C RNR4 VII 856296 855259 ribonucleotide reductase small subunit DNA replication yes
YGR183C QCR9 VII 859471 859058 ubiquinol--cytochrome-c reductase subunit 9 yes
YGR222W PET54 VII 939916 940797 splicing protein and translational activator, mitochondrial protein biosynthesis yes
YGR244C LSC2 VII 979315 978032 succinate-CoA ligase beta subunit tricarboxylic acid cycle yes
YHL038C CBP2 VIII 25506 23614 apo-cytochrome b pre-mRNA processing protein 2 yes
YHR038W FIL1 VIII 184057 184749 Killed in Mutagen, sensitive to Diepoxybutane and/or Mitomycin C protein biosynthesis yes
YHR120W MSH1 VIII 349576 352455 DNA mismatch repair protein, mitochondrial DNA repair yes
YHR147C MRPL6 VIII 393284 392640 ribosomal protein of the large subunit, mitochondrial protein biosynthesis yes
YHR193C EGD2 VIII 488232 487708 similarity to human alpha-NAC nascent polypeptide association yes
YIL033C BCY1 IX 291668 290418 cAMP dependent protein kinase, regulatory subunit stress response yes
YIL051C MMD1 IX 258279 257842 required for maintenance of mitochondrial DNA yes
YIR021W MRS1 IX 397291 398382 involved in mitochondrial RNA splicing of COB mRNA mRNA splicing yes
YJL023C PET130 X 398094 397051 biological_process unknown yes
YJL063C MRPL8 X 316171 315455 ribosomal protein L17. mitochondrial protein biosynthesis yes
YJL095W BCK1 X 246951 251387 ser/thr protein kinase of the MEKK family establishment of cell polarity (sensu Saccharomyces) yes
YJL208C NUC1 X 41183 40194 nuclease, mitochondrial DNA recombination yes
YJL209W CBP1 X 38005 39969 apo-cytochrome b pre-mRNA processing protein yes
YJR034W PET191 X 496375 496701 involved in assembly of cytochrome oxidase cytochrome c oxidase biogenesis yes
YJR040W GEF1 X 507438 509777 voltage-gated chloride channel protein transport yes
YJR122W CAF17 X 649469 650962 CCR4 associated factor yes
YKL011C CCE1 XI 420854 419793 cruciform-cutting endonuclease, mitochondrial tRNA processing yes
YKL032C IXR1 XI 381496 379703 intrastrand crosslink recognition protein and transcription factor yes
YKL055C OAR1 XI 335799 334963 putative 3-oxoacyl-(acyl carrier protein) reductase respiration yes
YKL085W MDH1 XI 278765 279769 malate dehydrogenase precursor, mitochondrial tricarboxylic acid cycle yes
YKL087C CYT2 XI 277505 276831 holocytochrome-c1 synthase yes
YKL093W MBR1 XI 264431 265450 required for optimal growth on glycerol yes
YKL109W HAP4 XI 231870 233534 CCAAT-binding factor subunit transcription yes
YKL134C 1-OCT XI 191440 189128 mitochondrial intermediate peptidase iron homeostasis yes
YKL148C SDH1 XI 171131 169209 succinate dehydrogenase flavoprotein precursor tricarboxylic acid cycle yes
YKL154W SRP102 XI 161603 162337 signal recognition particle receptor, beta chain yes
YKL167C MRP49 XI 134136 133723 ribosomal protein, mitochondrial protein biosynthesis yes
YKL192C ACP1 XI 80539 80162 mitochonrial acyl-carrier protein fatty acid biosynthesis yes
YKL208W CBT1 XI 47158 47973 apo-cytochrome b pre-mRNA processing protein yes
YKR031C SPO14 XI 506032 500981 phospholipase D yes
YLL006W MMM1 XII 136585 137865 required for mitochondrial shape and structure mitochondrion inheritance yes
YLL009C COX17 XII 131413 131204 interacts genetically with SCO1 and SCO2 in cytochrome oxidase assembly cytochrome c oxidase biogenesis yes
YLL041C SDH2 XII 53930 53130 succinate dehydrogenase iron-sulfur protein subunit tricarboxylic acid cycle yes
YLR038C COX12 XII 225173 224922 cytochrome-c oxidase, subunit VIB yes
YLR067C PET309 XII 270711 267814 required for stability and translation of COX1 mRNA protein biosynthesis yes
YLR139C SLS1 XII 423474 421543 suppresses lethality of SSM4 deletion yes
YLR295C ATP14 XII 722373 721999 F1F0-ATPase complex, subunit h ATP synthesis coupled proton transport yes
YLR304C ACO1 XII 737548 735212 aconitate hydratase tricarboxylic acid cycle yes
YLR355C ILV5 XII 839252 838065 ketol-acid reducto-isomerase yes
YLR369W SSQ1 XII 859551 861524 mitochondrial heat shock protein 70 DNA dependent DNA replication yes
YLR377C FBP1 XII 874791 873745 fructos1.0e-1.6-bisphosphatase gluconeogenesis yes
YLR382C NAM2 XII 884751 882067 leucine--tRNA ligase precursor, mitochondrial yes
YLR439W MRPL4 XII 1014486 1015445 ribosomal protein, mitochondrial protein biosynthesis yes
YML078W CPR3 XIII 111002 111550 cyclophilin (peptidylprolyl isomerase), mitochondrial protein folding yes
YML081C-A ATP18 XIII 104162 103983 gene for subunit i/j of the mitochondrial F1F0-ATP synthase ATP synthesis coupled proton transport yes
YML091C RPM2 XIII 90731 87123 ribonuclease P precursor, mitochondrial yes
YML105C SEC65 XIII 58687 57866 signal recognition particle subunit SRP-dependent, co-translational membrane targeting, signal sequence recognition yes
YML110C COQ5 XIII 50954 50031 ubiquinone biosynthesis, methyltransferase ubiquinone metabolism yes
YML129C COX14 XIII 14754 14542 cytochrome-c oxidase assembly protein respiration yes
YMR021C MAC1 XIII 318417 317164 metal binding activator yes
YMR060C TOM37 XIII 392514 391531 mitochondrial outer membrane import receptor subunit, 37 kD mitochondrial translocation yes
YMR072W ABF2 XIII 411568 412119 high mobility group protein mitochondrial genome maintenance yes
YMR089C YTA12 XIII 448085 445608 protease of the SEC18/CDC48/PAS1 family of ATPases (AAA) protein complex assembly yes
YMR145C XIII 556474 554792 mitochondrial cytosolically directed NADH dehydrogenase biological_process unknown yes
YMR152W YIM1 XIII 563095 564192 mitochondrial processing yes
YMR165C SMP2 XIII 592627 590039 involved in plasmid maintenance, respiration and cell proliferation yes
YMR228W MTF1 XIII 724625 725650 RNA polymerase specific factor, mitochondrial transcription from mitochondrial promoter yes
YMR241W YHM2 XIII 751960 752904 yeast suppressor gene of HM (mitochondrial histone) mutant (ABF2) biological_process unknown yes
YMR256C COX7 XIII 779126 778944 cytochrome-c oxidase, subunit VII yes
YMR257C PET111 XIII 782030 779628 required for translation of COX2 mRNA protein biosynthesis yes
YMR282C AEP2 XIII 835098 833356 required for the expression of subunit-9 of atp synthase protein biosynthesis yes
YMR287C MSU1 XIII 845345 842436 3'-5' exonuclease for RNA 3' ss-tail, mitochondrial yes
YMR301C ATM1 XIII 869627 867555 ATP-binding cassette transporter protein, mitochondrial iron homeostasis yes
YNL003C PET8 XIV 625826 624972 similarity to mitochondrial rat tricarboxylate transport protein precursor biological_process unknown yes
YNL005C MRP7 XIV 622425 621310 ribosomal protein YmL2 precursor, mitochondrial protein biosynthesis yes
YNL037C IDH1 XIV 558998 557916 isocitrate dehydrogenase (NAD+) subunit 1, mitochondrial tricarboxylic acid cycle yes
YNL055C POR1 XIV 518841 517990 mitochondrial outer membrane porin transport yes
YNL137C NAM9 XIV 370052 368592 ribosomal protein, mitochondrial protein biosynthesis yes
YNR001C CIT1 XIV 631058 629619 citrate (si)-synthase, mitochondrial tricarboxylic acid cycle yes
YNR023W SNF12 XIV 670415 672115 component of SWI/SNF global transcription activator complex chromatin modeling yes
YNR045W PET494 XIV 706136 707605 translational activator, mitochondrial protein biosynthesis yes
YOL001W PHO80 XV 325249 326130 cyclin cell cycle yes
YOL025W LAG2 XV 274957 276939 involved in determining longevity yes
YOL096C COQ3 XV 139056 138106 enzyme of ubiquinone (coenzyme Q) biosynthesis ubiquinone metabolism yes
YOL147C PEX11 XV 48641 47931 peroxisomal membrane protein - peroxin peroxisome organization and biogenesis yes
YOR017W PET127 XV 361411 363813 component of mitochondrial translation system RNA processing yes
YOR125C CAT5 XV 559847 559029 involved in coenzyme Q (ubiquinone) biosynthesis ubiquinone metabolism yes
YOR136W IDH2 XV 580249 581358 isocitrate dehydrogenase (NAD+) subunit 2. mitochondrial tricarboxylic acid cycle yes
YOR158W PET123 XV 632163 633119 ribosomal protein, mitochondrial protein biosynthesis yes
YOR196C LIP5 XV 716836 715592 lipoic acid synthase fatty acid metabolism yes
YOR201C PET56 XV 721707 720469 rRNA (guanosine-2'-O-)-methyltransferase ribosomal large subunit assembly and maintenance yes
YOR221C MCT1 XV 757830 756475 malonyl-CoA:ACP transferase fatty acid metabolism yes
YOR231W MKK1 XV 772600 774126 ser/thr protein kinase protein phosphorylation yes
YOR278W HEM4 XV 842813 843640 uroporphyrinogen III synthase yes
YOR330C MIP1 XV 943455 939613 DNA-directed DNA polymerase gamma catalytic subunit, mitochondrial DNA dependent DNA replication yes
YOR332W VMA4 XV 943648 944349 H+-ATPase V1 domain 27 KD subunit, vacuolar vacuolar acidification yes
YOR334W MRS2 XV 944588 946000 RNA splicing protein and member of the mitochondrial carrier family (MCF) mRNA splicing yes
YOR355W GDS1 XV 1005130 1006698 NAM9-1 suppressor yes
YOR358W HAP5 XV 1010154 1010882 CCAAT-binding factor subunit respiration yes
YPL029W SUV3 XVI 495502 497715 ATP-dependent RNA helicase, mitochondrial yes
YPL040C ISM1 XVI 478996 475988 yes
YPL078C ATP4 XVI 408739 408005 F1F0-ATPase complex, F0 subunit B ATP synthesis coupled proton transport yes
YPL097W MSY1 XVI 364947 366425 yes
YPL104W MSD1 XVI 355695 357671 aspartate--tRNA ligase, mitochondrial protein biosynthesis yes
YPL118W MRP51 XVI 326627 327661 strong similarity to S.kluyveri hypothetical protein protein biosynthesis yes
YPL140C MKK2 XVI 289033 287513 protein kinase of the map kinase kinase (MEK) family protein phosphorylation yes
YPL148C PPT2 XVI 272826 272293 phosphopantetheine protein transferase lipid transport yes
YPL179W PPQ1 XVI 208156 209805 phosphoprotein phosphatase translational regulation yes
YPL254W HFI1 XVI 69485 70951 transcriptional coactivator transcription yes
YPL268W PLC1 XVI 35236 37845 1-phosphatidylinositol-4.5-bisphosphate phosphodiesterase pseudohyphal growth yes
YPL271W ATP15 XVI 30079 30267 F1F0-ATPase complex, F1 epsilon subunit ATP synthesis coupled proton transport yes
YPR024W YME1 XVI 610476 612719 protease of the SEC18/CDC48/PAS1 family of ATPases (AAA) mitochondrion organization and biogenesis yes
YPR051W MAK3 XVI 664955 665485 N-acetyltransferase yes
YPR088C SRP54 XVI 713024 711399 signal recognition particle subunit yes
YPR133W-A TOM5 XVI 797552 797704 mitochondrial outer membrane protein mitochondrial translocation yes
YPR166C MRP2 XVI 876624 876277 ribosomal protein S14 protein biosynthesis yes
YPR191W QCR2 XVI 919376 920482 ubiquinol--cytochrome-c reductase 40KD chain II yes
YPR198W SGE1 XVI 934029 935660 drug resistance protein yes


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