Class II Candidates in the Yeast Deletion and Mitochondria (YDPM) Database
The number of ORFs found in the set = 276
ORF Gene Chromosome Start Coord Stop Coord CYGD description SGD description
YAL021C CCR4 I 113358 110845 transcriptional regulator
YAL035W FUN12 I 76429 79437 general translation factor eIF2 homolog biological_process unknown
YAR002W NUP60 I 152254 153873 peroxisomal matrix protein import
YBL022C PIM1 II 181237 177836 ATP-dependent protease, mitochondrial heat shock response
YBL058W SHP1 II 111398 112669 potential regulatory subunit for GLC7P sporulation (sensu Saccharomyces)
YBL072C RPS8A II 89120 88518 protein biosynthesis
YBL087C RPL23A II 60732 59815 protein biosynthesis
YBR048W RPS11B II 332790 333771 ribosomal protein S11.e.B protein biosynthesis
YBR069C TAT1 II 378392 376533 amino acid permease transport
YBR077C II 392251 391763 biological_process unknown
YBR084C-A RPL19A II 415219 414144 protein biosynthesis
YBR106W PHO88 II 452617 453183 involved in phosphate transport phosphate transport
YBR126C TPS1 II 490350 488863 alpha,alpha-trehalose-phosphate synthase, 56 KD subunit stress response
YBR168W II 572329 573570 weak similarity to hypothetical protein YLR324w biological_process unknown
YBR181C RPS6B II 592732 591670 protein biosynthesis
YBR189W RPS9B II 604466 605466 ribosomal protein S9.e.B protein biosynthesis
YBR191W RPL21A II 606228 607098 protein biosynthesis
YBR194W II 609996 610367 biological_process unknown
YBR200W BEM1 II 620830 622485 bud emergence mediator
YBR266C II 740346 739894 questionable ORF biological_process unknown
YBR267W II 739799 740980 biological_process unknown
YBR283C SSH1 II 770372 768900 involved in co-translational pathway of protein transport co-translational membrane targeting
YCL016C DCC1 III 95762 94620 biological_process unknown
YCL029C BIK1 III 69921 68599 nuclear fusion protein mitotic anaphase B
YCL037C SRO9 III 58774 57374 La motif-containing proteins that modulate mRNA translation
YCL058C FYV5 III 23981 23523 biological_process unknown
YCR002C CDC10 III 118342 117374 cell division control protein establishment of cell polarity (sensu Saccharomyces)
YCR020W-B HTL1 III 155314 155550 similarity to S. bayanus biological_process unknown
YCR031C RPS14A III 178212 177492 40S Ribosomal protein S14.e protein biosynthesis
YCR047C BUD23 III 211537 210710 weak similarity to N-methyltransferases biological_process unknown
YCR063W BUD31 III 228310 228783 strong similarity to Xenopus G10 and human edg-2 protein biological_process unknown
YCR066W RAD18 III 231492 232955 DNA repair protein
YCR077C PAT1 III 252621 250231 topoisomerase II-associated protein
YDL013W HEX3 IV 429063 430922
YDL020C RPN4 IV 416704 415109 26S proteasome subunit ubiquitin-dependent protein degradation
YDL041W KRE26 IV 378098 378451 questionable ORF biological_process unknown
YDL047W SIT4 IV 369768 370703 ser/thr protein phosphatase G1/S transition of mitotic cell cycle
YDL061C RPS29B IV 340797 340627 protein biosynthesis
YDL062W IV 339856 340281 biological_process unknown
YDL063C IV 340133 338271 weak similarity to human estrogen-responsive finger protein biological_process unknown
YDL081C RPP1A IV 310121 309801 60S large subunit acidic ribosomal protein a1 protein biosynthesis
YDL082W RPL13A IV 308423 309387 60S large subunit ribosomal protein L13 protein biosynthesis
YDL083C RPS16B IV 307788 306925 protein biosynthesis
YDL090C RAM1 IV 296328 295033 protein farnesyltransferase, beta subunit
YDL115C IV 254716 253994 biological_process unknown
YDL116W NUP84 IV 251565 253745 nuclear pore protein mRNA-nucleus export
YDL130W RPP1B IV 229906 230527 60S large subunit acidic ribosomal protein L44prime protein biosynthesis
YDL136W RPL35B IV 217600 218367 60S large subunit ribosomal protein protein biosynthesis
YDL151C FYV3 IV 183900 183319 questionable ORF biological_process unknown
YDL160C DHH1 IV 171931 170411 strong similarity to RNA helicases of the DEAD box family transcription
YDL191W RPL35A IV 117665 118518 60S large subunit ribosomal protein protein biosynthesis
YDR017C KCS1 IV 482262 479110 potential transcription factor of the BZIP type
YDR024W FYV1 IV 491012 491497 hypothetical protein biological_process unknown
YDR025W RPS11A IV 491510 492319 ribosomal protein S11.e protein biosynthesis
YDR028C REG1 IV 500874 497830 regulatory subunit for protein phosphatase GLC7P glycogen metabolism
YDR074W TPS2 IV 593887 596577 alpha,alpha-trehalose-phosphate synthase, 102 KD subunit stress response
YDR076W RAD55 IV 598462 599682 DNA repair protein
YDR083W RRP8 IV 612010 613218 protein involved in cleavage at site A2 in pre-rRNA in the pathway of ribosomal RNA processing biological_process unknown
YDR101C IV 657460 655679 biological_process unknown
YDR125C ECM18 IV 702751 701390 involved in cell wall biogenesis and architecture
YDR140W FYV9 IV 734131 734796 similarity to probable methyltransferase S. pombe biological_process unknown
YDR156W RPA14 IV 769518 769931 DNA-directed RNA polymerase I, A14 subunit transcription from Pol I promoter
YDR161W TCI1 IV 779036 780199 protein phosphatase Two C-Interacting protein biological_process unknown
YDR173C ARG82 IV 811625 810558 arginine metabolism transcription factor
YDR174W HMO1 IV 812103 812843 Non-histone protein
YDR184C ATC1 IV 831505 830621 binds Aip3p
YDR241W BUD26 IV 945142 945429 questionable ORF biological_process unknown
YDR264C AKR1 IV 998314 996020 ankyrin repeat-containing protein endocytosis
YDR300C PRO1 IV 1062782 1061496 glutamate 5-kinase
YDR363W-A SEM1 IV 1202117 1202386 regulator of exocytosis and pseudohyphal differentiation
YDR369C XRS2 IV 1217569 1215005 DNA repair protein
YDR382W RPP2B IV 1239481 1239813 60S large subunit acidic ribosomal protein protein biosynthesis
YDR417C IV 1301915 1301544 biological_process unknown
YDR418W RPL12B IV 1301605 1302102 60S large subunit ribosomal protein L12.e protein biosynthesis
YDR432W NPL3 IV 1328772 1330016 nucleolar protein
YDR433W KRE22 IV 1329589 1330029 questionable ORF biological_process unknown
YDR450W RPS18A IV 1359912 1360787 protein biosynthesis
YDR463W STP1 IV 1386631 1388364 pre-tRNA splicing protein, transcription factor tRNA splicing
YDR471W RPL27B IV 1401759 1402553 protein biosynthesis
YDR500C RPL37B IV 1450856 1450201 protein biosynthesis
YEL033W V 86179 86598 biological_process unknown
YEL045C V 69265 68840 biological_process unknown
YEL046C GLY1 V 68792 67629 L-threonine aldolase, low-specific
YEL054C RPL12A V 53218 52721 60S large subunit ribosomal protein L12.e protein biosynthesis
YEL061C CIN8 V 39651 36535 kinesin-related protein mitotic chromosome segregation
YER040W GLN3 V 229794 231986 transcription factor for positive nitrogen regulation
YER044C ERG28 V 238015 237569 strong similarity to hypothetical protein SPBC337.09 S. pombe ergosterol biosynthesis
YER056C-A RPL34A V 270183 269421 strong similarity to mammalian ribosomal L34 proteins protein biosynthesis
YER074W RPS24A V 306319 307192 protein biosynthesis
YER095W RAD51 V 349976 351178 DNA repair protein
YER117W RPL23B V 396765 397649 ribosomal protein L23.e protein biosynthesis
YER155C BEM2 V 482843 476340 GTPase-activating protein establishment of cell polarity (sensu Saccharomyces)
YER156C V 484336 483320 similarity to hypothetical C. elegans protein C27H6.5 biological_process unknown
YFL023W FYV11 VI 90984 93374 similarity to repeat structures in a Plasmodium falciparum protein (MESA) that binds human erythrocyte protein 4.1. biological_process unknown
YFR001W LOC1 VI 149104 149718 weak similarity to rabbit triadin SPP41P
YGL031C RPL24A VII 437930 437463 60S large subunit ribosomal protein L24.e.A protein biosynthesis
YGL070C RPB9 VII 374825 374457 DNA-directed RNA polymerase II, 14.2 KD subunit transcription from Pol II promoter
YGL072C VII 371360 371001 biological_process unknown
YGL076C RPL7A VII 365994 364333 60S large subunit ribosomal protein L7.e.A protein biosynthesis
YGL078C DBP3 VII 361857 360286 putative RNA helicase required for pre-rRNA processing 35S primary transcript processing
YGL088W VII 345834 346199 biological_process unknown
YGL105W ARC1 VII 307435 308565 protein with specific affinity for G4 quadruplex nucleic acids
YGL147C RPL9A VII 228332 227757 protein biosynthesis
YGL253W HXK2 VII 23935 25395 hexokinase II glycolysis
YGR056W RSC1 VII 601655 604441 member of RSC complex, which remodels the structure of chromatin chromatin modeling
YGR078C PAC10 VII 640365 639766 GIM4 - Gim complex component tubulin folding
YGR081C VII 643774 643142 biological_process unknown
YGR085C RPL11B VII 648901 648377 ribosomal protein protein biosynthesis
YGR118W RPS23A VII 726968 727725 protein biosynthesis
YGR140W CBF2 VII 767424 770294 kinetochore protein complex CBF3. 110 KD subunit mitosis
YGR159C NSR1 VII 807651 806407 nuclear localization sequence binding protein rRNA processing
YGR160W FYV13 VII 807068 807679 Function required for Yeast Viability on toxin exposure biological_process unknown
YGR162W TIF4631 VII 824054 826912 mRNA cap-binding protein (eIF4F), 150K subunit protein synthesis initiation
YGR214W RPS0A VII 920570 921783 40S ribosomal protein p40 homolog A protein biosynthesis
YGR240C PFK1 VII 973730 970767 6-phosphofructokinase, alpha subunit glycolysis
YGR272C VII 1038497 1038039 similarity to hypothetical S.pombe protein SPAC12G12.02 biological_process unknown
YGR285C ZUO1 VII 1063150 1061849 zuotin, a putative Z-DNA binding protein protein folding
YHL011C PRS3 VIII 81611 80649 ribose-phosphate pyrophosphokinase histidine biosynthesis
YHR010W RPL27A VIII 126513 127484 60S large subunit ribosomal protein L27.e protein biosynthesis
YHR021C RPS27B VIII 148660 147862 protein biosynthesis
YHR034C VIII 177990 176956 biological_process unknown
YHR041C SRB2 VIII 189855 189122 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit transcription from Pol II promoter
YHR064C PDR13 VIII 227244 225526 regulator protein involved in pleiotropic drug resistance
YHR066W SSF1 VIII 229336 230697 mating protein
YHR081W VIII 267539 268093 biological_process unknown
YHR107C CDC12 VIII 328038 326815 septin establishment of cell polarity (sensu Saccharomyces)
YHR183W GND1 VIII 470956 472425 6-phosphogluconate dehydrogenase
YHR191C CTF8 VIII 486627 486226 weak similarity to hypothetical protein B24H17.20 Neurospora crassa
YHR203C RPS4B VIII 505526 504472 ribosomal protein S4.e.c8 protein biosynthesis
YIL040W IX 277722 278138 biological_process unknown
YIL110W IX 156042 157175 biological_process unknown
YIL133C RPL16A IX 99416 98527 protein biosynthesis
YIR005W IST3 IX 364886 365332 similarity to RNA-binding proteins biological_process unknown
YIR026C YVH1 IX 405964 404870 protein tyrosine phosphatase meiosis
YJL080C SCP160 X 288922 285254 required for maintenance of exact ploidy
YJL124C LSM1 X 187344 186826 Sm-like (Lsm) protein
YJL127C SPT10 X 183919 181997 transcription regulatory protein chromatin modeling
YJL136C RPS21B X 156971 156248 protein biosynthesis
YJL177W RPL17B X 90783 91654 protein biosynthesis
YJL188C BUD19 X 76509 76201 questionable ORF biological_process unknown
YJL189W RPL39 X 75932 76473 60S large subunit ribosomal protein L39.e protein biosynthesis
YJR043C POL32 X 517205 516153 polymerase-associated gene, third (55 kDa) subunit of DNA polymerase delta nucleotide-excision repair
YJR055W HIT1 X 538464 538958 biological_process unknown
YJR063W RPA12 X 554887 555264 DNA-directed RNA polymerase I, 13.7 KD subunit transcription from Pol I promoter
YJR090C GRR1 X 594019 590564 required for glucose repression and for glucose and cation transport ubiquitin-dependent protein degradation
YJR104C SOD1 X 622705 622241 copper-zinc superoxide dismutase
YJR105W ADO1 X 623272 624294 strong similarity to human adenosine kinase biological_process unknown
YJR118C ILM1 X 643794 643183 weak similarity to Helicobacter pylori UreD protein
YJR145C RPS4A X 702761 701720 ribosomal protein S4.e.c10 protein biosynthesis
YKL006W RPL14A XI 431544 432358 protein biosynthesis
YKL009W MRT4 XI 425880 426590
YKL048C ELM1 XI 348777 346855 protein phosphorylation
YKL054C VID31 XI 338395 336179 similarity to glutenin, high molecular weight chain proteins and SNF5P
YKL057C NUP120 XI 333611 330498 nuclear pore protein mRNA-nucleus export
YKL073W LHS1 XI 296072 298717 chaperone of the ER lumen
YKL113C RAD27 XI 225518 224370 ssDNA endonuclease and 5'-3'exonuclease DNA repair
YKL126W YPK1 XI 205350 207392 ser/thr-specific protein kinase biological_process unknown
YKL143W LTV1 XI 176783 178174 stress response
YKL204W EAP1 XI 53704 55602 translational regulation, initiation
YKR024C DBP7 XI 487010 484782 RNA helicase required for 60S ribosomal subunit assembly 35S primary transcript processing
YKR057W RPS21A XI 551293 551878 protein biosynthesis
YKR082W NUP133 XI 592461 595934 nuclear pore protein mRNA-nucleus export
YKR094C RPL40B XI 618384 617630 protein biosynthesis
YLL002W REM50 XII 146290 147600 drug resistance
YLL044W XII 48215 48661 biological_process unknown
YLL045C RPL8B XII 48628 47858 60s large subunit ribosomal protein L7a.e.B protein biosynthesis
YLR048W RPS0B XII 242233 243350 40S ribosomal protein p40 homolog B protein biosynthesis
YLR052W IES3 XII 247202 247954 hypothetical protein biological_process unknown
YLR061W RPL22A XII 263195 263949 protein biosynthesis
YLR062C BUD28 XII 263955 263578 questionable ORF biological_process unknown
YLR068W FYV7 XII 271009 271464 hypothetical protein biological_process unknown
YLR074C BUD20 XII 282457 281957 weak similarity to human zinc finger protein biological_process unknown
YLR110C CCW12 XII 370099 369698 strong similarity to FLO1P biological_process unknown
YLR184W XII 522108 522455 biological_process unknown
YLR185W RPL37A XII 522665 523290 ribosomal protein L37.e protein biosynthesis
YLR200W YKE2 XII 549014 549358 Gim complex component
YLR226W BUR2 XII 589354 590541 divergent CDK-cyclin complex mitotic chromosome segregation
YLR233C EST1 XII 609524 607425 telomere elongation protein
YLR242C ARV1 XII 623883 622918 biological_process unknown
YLR264W RPS28B XII 673131 673334 protein biosynthesis
YLR287C-A RPS30A XII 713158 712537 40S small subunit ribosomal protein protein biosynthesis
YLR320W XII 771940 776304 biological_process unknown
YLR337C VRP1 XII 805106 802653 verprolin actin filament organization
YLR342W FKS1 XII 809997 815627 1.3-beta-D-glucan synthase, catalytic subunit cell wall organization and biogenesis
YLR357W RSC2 XII 841330 843999 member of RSC complex, which remodels the structure of chromatin chromatin modeling
YLR358C XII 844049 843486 biological_process unknown
YLR370C ARC18 XII 862253 861717 actin filament organization
YLR371W ROM2 XII 862713 866783 GDP/GTP exchange factor for RHO1P establishment of cell polarity (sensu Saccharomyces)
YLR372W SUR4 XII 867353 868390 sterol isomerase, fatty acid elongase fatty acid biosynthesis
YLR386W XII 893628 896270 biological_process unknown
YLR388W RPS29A XII 898651 898821 protein biosynthesis
YLR399C BDF1 XII 921595 919535 sporulation protein sporulation (sensu Saccharomyces)
YLR403W SFP1 XII 925565 927616 zinc finger protein biological_process unknown
YLR435W XII 1006241 1006990 biological_process unknown
YLR448W RPL6B XII 1028848 1029762 protein biosynthesis
YML014W XIII 243225 244064 biological_process unknown
YML024W RPS17A XIII 225889 226697 ribosomal protein S17.e.A protein biosynthesis
YML026C RPS18B XIII 223828 222987 protein biosynthesis
YML032C RAD52 XIII 214029 212515 recombination and DNA repair protein
YML036W XIII 205642 206211 biological_process unknown
YML063W RPS1B XIII 146482 147249 ribosomal protein S3a.e protein biosynthesis
YML094W GIM5 XIII 82275 82849 Gim complex component protein folding
YML128C MSC1 XIII 16677 15136 protein of unknown function that affects meiotic homologous chromatid recombination biological_process unknown
YMR125W STO1 XIII 517538 520445 large subunit of the nuclear cap-binding protein complex CBC
YMR142C RPL13B XIII 551206 550205 protein biosynthesis
YMR143W RPS16A XIII 551927 552902 protein biosynthesis
YMR179W SPT21 XIII 619857 622133 required for normal transcription at a number of loci transcription
YMR193C-A XIII 651457 651071 biological_process unknown
YMR194W RPL36A XIII 651144 651909 protein biosynthesis
YMR205C PFK2 XIII 674765 671886 6-phosphofructokinase, beta subunit glycolysis
YMR219W ESC1 XIII 707132 712108
YMR224C MRE11 XIII 720652 718574 DNA repair and meiotic recombination protein DNA repair
YMR230W RPS10B XIII 732413 733140 protein biosynthesis
YMR242C RPL20A XIII 753766 753224 protein biosynthesis
YMR269W XIII 804663 805091 biological_process unknown
YNL054W VAC7 XIV 526082 529579 vacuolar protein
YNL059C ARP5 XIV 514931 512664 Actin-related protein biological_process unknown
YNL069C RPL16B XIV 494998 493953 protein biosynthesis
YNL079C TPM1 XIV 479162 478563 tropomyosin 1 establishment of cell polarity (sensu Saccharomyces)
YNL091W XIV 452405 456127 similarity to chicken h-caldesmon, USO1P and YKL201c biological_process unknown
YNL096C RPS7B XIV 444312 443395 protein biosynthesis
YNL133C FYV6 XIV 374689 374168 hypothetical protein biological_process unknown
YNL139C RLR1 XIV 365714 360921 regulatory protein transcription
YNL147W LSM7 XIV 350937 351380 Sm-like (Lsm) protein
YNL199C GCR2 XIV 266527 264923 glycolytic genes transcriptional activator glycolysis
YNL225C CNM67 XIV 224468 222723 involved in cytokinesis microtubule nucleation
YNL226W XIV 222238 222648 biological_process unknown
YNL227C XIV 222430 220658 similarity to dnaJ-like proteins biological_process unknown
YNL228W XIV 220644 221420 biological_process unknown
YNL229C URE2 XIV 220200 219136 nitrogen catabolite repression regulator nitrogen utilization regulation
YNL248C RPA49 XIV 182607 181360 DNA-directed RNA polymerase A (I) chain, 46 kDa transcription from Pol I promoter
YNL250W RAD50 XIV 175409 179347 DNA repair protein DNA repair
YNL271C BNI1 XIV 135382 129521 regulator of budding establishment of cell polarity (sensu Saccharomyces)
YNR004W XIV 635940 636380 weak similarity to bovine interferon gamma precursor biological_process unknown
YNR050C LYS9 XIV 715385 714045 saccharopine dehydrogenase (NADP+, L-glutamate forming)
YNR052C POP2 XIV 720644 719343 required for glucose derepression
YOL039W RPP2A XV 254295 254615 acidic ribosomal protein P2.beta protein biosynthesis
YOL041C NOP12 XV 252644 251265 weak similarity to M.sativa NUM1, hnRNP protein from C. tentans and D. melanogaster, murine/bovine poly(A) binding prote biological_process unknown
YOL086C ADH1 XV 160593 159547 alcohol dehydrogenase I
YOL121C RPS19A XV 92849 92025 protein biosynthesis
YOL139C CDC33 XV 61023 60382 translation initiation factor eIF4E protein synthesis initiation
YOR001W RRP6 XV 326832 329033 similarity to human nucleolar 100K polymyositis-scleroderma protein 35S primary transcript processing
YOR006C XV 338621 337680 biological_process unknown
YOR035C SHE4 XV 400103 397734 required for mother cell-specific gene expression
YOR078W BUD21 XV 472726 473370 weak similarity to YMR172w biological_process unknown
YOR096W RPS7A XV 505793 506766 protein biosynthesis
YOR182C RPS30B XV 678792 678190 protein biosynthesis
YOR183W FYV12 XV 678871 679260 hypothetical protein biological_process unknown
YOR198C BFR1 XV 720064 718652 maintenance of normal ploidy cytokinesis
YOR293W RPS10A XV 867094 867848 protein biosynthesis
YOR295W XV 869204 869890 biological_process unknown
YOR309C XV 897070 896690 biological_process unknown
YOR312C RPL20B XV 901173 900242 protein biosynthesis
YPL008W CHL1 XVI 539380 541965 protein of the DEAH box family mitosis
YPL061W ALD6 XVI 432583 434085 aldehyde dehydrogenase, cytosolic carbohydrate metabolism
YPL080C XVI 406493 406167 biological_process unknown
YPL090C RPS6A XVI 378390 377286 protein biosynthesis
YPL106C SSE1 XVI 352270 350189 heat shock protein of HSP70 family protein folding
YPL125W KAP120 XVI 313387 316485 nuclear transport factor, member of karyopherin-beta family
YPL157W XVI 254813 255760 weak similarity to S.pombe hypothetical protein SPAC2G11.15c biological_process unknown
YPL178W CBC2 XVI 212157 212783 small subunit of the nuclear cap-binding protein complex CBC
YPL193W RSA1 XVI 181402 182547 nucleoplasmic protein involved in assembly of 60S ribosomal subunits ribosomal large subunit assembly and maintenance
YPL205C XVI 164265 163921 biological_process unknown
YPL239W YAR1 XVI 99484 100086 ankyrin repeat-containing protein biological_process unknown
YPL268W PLC1 XVI 35236 37845 1-phosphatidylinositol-4.5-bisphosphate phosphodiesterase pseudohyphal growth
YPR043W RPL43A XVI 654161 654842 ribosomal protein L37a.e protein biosynthesis
YPR044C XVI 654872 654519 biological_process unknown
YPR057W BRR1 XVI 672466 673491 involved in snRNP biogenesis mRNA splicing
YPR087W XVI 711350 711670 biological_process unknown
YPR101W SNT309 XVI 730489 731016 splicing factor mRNA splicing
YPR106W ISR1 XVI 740058 741389 protein kinase
YPR131C NAT3 XVI 794661 793906 N-acetyltransferases
YPR132W RPS23B XVI 794960 795762 protein biosynthesis
YPR135W CTF4 XVI 799229 802012 DNA-directed DNA polymerase alpha-binding protein DNA repair
YPR139C XVI 814053 813151 biological_process unknown
YPR159W KRE6 XVI 857578 859740 glucan synthase subunit


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