Table S2. Proteins identified by mass spectrometry.

ORF

GENE

Description (CYGD)

Q0045

COX1

cytochrome-c oxidase subunit I

Q0085

ATP6

F1F0-ATPase complex, FO A subunit

Q0115

BI3

mRNA maturase BI3

Q0140

VAR1

mitochondrial ribosomal protein

Q0250

COX2

cytochrome-c oxidase subunit II

YAL001C

TFC3

TFIIIC (transcription initiation factor) subunit, 138 kD

YAL011W

SWC1

weak similarity to Mus musculus p53-associated cellular protein

YAL023C

PMT2

mannosyltransferase

YAL044C

GCV3

glycine decarboxylase, subunit H

YBL002W

HTB2

histone H2B.2

YBL003C

HTA2

histone H2A.2

YBL004W

UTP20

weak similarity to Papaya ringspot virus polyprotein

YBL005W-B

YBL005W-B

TY1B protein

YBL015W

ACH1

acetyl-CoA hydrolase

YBL022C

PIM1

ATP-dependent protease, mitochondrial

YBL027W

RPL19B

60S large subunit ribosomal protein L19.e

YBL030C

PET9

ADP/ATP carrier protein (MCF)

YBL045C

COR1

ubiquinol--cytochrome-c reductase 44K core protein

YBL064C

PRX1

strong similarity to thiol-specific antioxidant enzyme

YBL072C

RPS8A

ribosomal protein S8.e

YBL079W

NUP170

nuclear pore protein

YBL087C

RPL23A

60S large subunit ribosomal protein L23.e

YBL088C

TEL1

telomere length control protein

YBL092W

RPL32

60S large subunit ribosomal protein L32.e

YBL095W

YBL095W

similarity to C.albicans hypothetical protein

YBL099W

ATP1

F1F0-ATPase complex, F1 alpha subunit

YBL101C

ECM21

involved in cell wall biogenesis and architecture

YBR003W

COQ1

hexaprenyl pyrophosphate synthetase precursor

YBR009C

HHF1

histone H4

YBR010W

HHT1

histone H3

YBR016W

YBR016W

strong similarity to hypothetical proteins YDL012c and YDR210w

YBR026C

ETR1

mitochondrial respiratory function protein

YBR031W

RPL4A

ribosomal protein

YBR037C

SCO1

involved in stabilization of Cox1p and Cox2p

YBR039W

ATP3

F1F0-ATPase complex, F1 gamma subunit

YBR048W

RPS11B

ribosomal protein S11.e.B

YBR054W

YRO2

strong similarity to HSP30 heat shock protein Yro1p

YBR058C

UBP14

ubiquitin specific protease

YBR063C

YBR063C

hypothetical protein

YBR084C-A

RPL19A

60S large subunit ribosomal protein L19.e

YBR084W

MIS1

C1-tetrahydrofolate synthase precursor, mitochondrial

YBR085W

AAC3

ADP/ATP carrier protein (MCF)

YBR106W

PHO88

involved in phosphate transport

YBR118W

TEF2

translation elongation factor eEF1 alpha-A chain, cytosolic

YBR120C

CBP6

apo-cytochrome B pre-mRNA processing protein

YBR146W

MRPS9

ribosomal protein S9 precursor, mitochondrial

YBR176W

ECM31

involved in cell wall biogenesis and architecture

YBR177C

EHT1

alcohol acyl transferase

YBR179C

FZO1

required for biogenesis of mitochondria

YBR181C

RPS6B

ribosomal protein S6.e

YBR192W

RIM2

mitochondrial carrier protein (MCF)

YBR221C

PDB1

pyruvate dehydrogenase (lipoamide) beta chain precursor

YBR227C

MCX1

similarity to E.coli ATP-binding protein clpX

YBR230C

YBR230C

hypothetical protein

YBR262C

YBR262C

questionable ORF

YBR263W

SHM1

serine hydroxymethyltransferase precursor, mitochondrial

YBR269C

YBR269C

weak similarity to 'cpa', phospholipase C, Clostridium perfringens

YBR291C

CTP1

citrate transport protein, mitochondrial (MCF)

YCL009C

ILV6

acetolactate synthase, regulatory subunit

YCL017C

NFS1

regulates Iron-Sulfur cluster proteins, cellular Iron uptake, andIron distribution

YCL043C

PDI1

protein disulfide-isomerase precursor

YCL044C

YCL044C

similarity to hypothetical protein K. lactis

YCL057C-A

YCL057C-A

strong similarity to hypothetical protein S.pombe

YCL057W

PRD1

proteinase yscD

YCL064C

CHA1

L-serine/L-threonine deaminase

YCR005C

CIT2

citrate (si)-synthase, peroxisomal

YCR012W

PGK1

phosphoglycerate kinase

YCR028C-A

RIM1

ssDNA-binding protein, mitochondrial

YCR031C

RPS14A

40S Ribosomal protein S14.e

YCR033W

SNT1

similarity to nuclear receptor co-repressor N-Cor

YCR073C

SSK22

MAP kinase kinase kinase

YDL004W

ATP16

F1F0-ATPase complex, F1 delta subunit

YDL015C

TSC13

required for elongation of the very long chain fatty acid (VLCFA) moiety of sphingolipids

YDL028C

MPS1

serine/threonine/tyrosine protein kinase

YDL058W

USO1

intracellular protein transport protein

YDL066W

IDP1

isocitrate dehydrogenase (NADP+), mitochondrial

YDL067C

COX9

cytochrome-c oxidase chain VIIA

YDL069C

CBS1

translational activator of cob mRNA

YDL081C

RPP1A

60S large subunit acidic ribosomal protein a1

YDL083C

RPS16B

ribosomal protein S16.e

YDL085W

NDE2

mitochondrial NADH dehydrogenase that catalyzes the oxidation of cytosolic NADH

YDL095W

PMT1

mannosyltransferase

YDL120W

YFH1

regulates mitochondrial iron accumulation

YDL125C

HNT1

similarity to protein kinase C inhibitor-I

YDL130W-A

STF1

ATPase stabilizing factor, 10 kDa

YDL133W

YDL133W

hypothetical protein

YDL136W

RPL35B

60S large subunit ribosomal protein

YDL171C

GLT1

glutamate synthase (NAPDPH) (GOGAT)

YDL174C

DLD1

D-lactate ferricytochrome C oxidoreductase (D-LCR)

YDL178W

AIP2

actin interacting protein 2

YDL181W

INH1

inhibitor of mitochondrial ATPase

YDL185W

TFP1

H+-ATPase V1 domain 69 KD catalytic subunit, vacuolar

YDL191W

RPL35A

60S large subunit ribosomal protein

YDL198C

YHM1

member of the mitochondrial carrier family (MCF)

YDL202W

MRPL11

ribosomal protein of the large subunit, mitochondrial

YDL222C

YDL222C

strong similarity to hypothetical protein YNL194c and similarity to YML052w

YDL230W

PTP1

protein tyrosine phosphatase

YDL239C

ADY3

hypothetical protein

YDR011W

SNQ2

multidrug resistance protein

YDR012W

RPL4B

ribosomal protein L4.e.B

YDR014W

RAD61

weak similarity to chicken neurofilament triplet M protein

YDR019C

GCV1

glycine decarboxylase, subunit T

YDR027C

LUV1

interacts with the beta-tubulin binding protein Rbl2p

YDR033W

MRH1

membrane protein related to Hsp30p

YDR036C

MRP5

similarity to enoyl CoA hydratase

YDR041W

RSM10

component of the mitochondrial ribosomal small subunit

YDR049W

YDR049W

similarity to C.elegans K06H7.3 protein

YDR061W

YDR061W

similarity to E.coli modF and photorepair protein phrA

YDR064W

RPS13

ribosomal protein

YDR070C

YDR070C

hypothetical protein

YDR116C

MRPL1

similarity to bacterial ribosomal L1 proteins

YDR146C

SWI5

transcription factor

YDR148C

KGD2

2-oxoglutarate dehydrogenase complex E2 component

YDR155C

CPH1

cyclophilin (peptidylprolyl isomerase)

YDR174W

HMO1

Non-histone protein

YDR175C

RSM24

component of the mitochondrial ribosomal small subunit

YDR178W

SDH4

succinate dehydrogenase membrane anchor subunit for sdh2p

YDR194C

MSS116

RNA helicase of the DEAD box family, mitochondrial

YDR195W

REF2

RNA 3'-end formation protein

YDR204W

COQ4

responsible for restoring ubiquinone biosynthesis in coq4 mutant

YDR224C

HTB1

histone H2B

YDR225W

HTA1

histone H2A

YDR231C

COX20

in the maturation and assembly of cytochrome oxidase involved protein

YDR232W

HEM1

5-aminolevulinate synthase

YDR234W

LYS4

homoaconitase

YDR237W

MRPL7

ribosomal protein of the large subunit, mitochondrial

YDR258C

HSP78

heat shock protein of clpb family of ATP-dependent proteases, mitochondrial

YDR285W

ZIP1

synaptonemal complex protein

YDR296W

MHR1

Involved in mitochondrial homologous DNA recombination

YDR298C

ATP5

F1F0-ATPase complex, OSCP subunit

YDR310C

SUM1

suppressor of SIR mutations

YDR322C-A

TIM11

subunit E of the dimeric form of mitochondrial F1F0-ATPase

YDR322W

MRPL35

ribosomal protein YmL35 of the large subunit, mitochondrial

YDR337W

MRPS28

ribosomal protein of the small subunit, mitochondrial

YDR342C

HXT7

high-affinity hexose transporter

YDR343C

HXT6

high-affinity hexose transporter

YDR345C

HXT3

low-affinity hexose transporter

YDR347W

MRP1

ribosomal protein of the small subunit, mitochondrial

YDR376W

ARH1

mitochondrial protein with similarity to human adrenodoxin reductase and ferredoxin-NADP+ reductase

YDR377W

ATP17

ATP synthase complex, subunit f

YDR393W

SHE9

weak similarity to rabbit trichohyalin

YDR406W

PDR15

ATP-binding cassette transporter family member

YDR430C

CYM1

similarity to C.perfringens hypothetical hypA protein

YDR450W

RPS18A

ribosomal protein S18.e.c4

YDR462W

MRPL28

ribosomal protein of the large subunit (YmL28), mitochondrial

YDR471W

RPL27B

60S large subunit ribosomal protein

YDR494W

RSM28

weak similarity to hypothetical protein D. melanogaster

YDR495C

VPS3

vacuolar sorting protein

YDR511W

ACN9

weak similarity to C. elegans protein F25H9.7 and to the human complement 3 precursor

YDR513W

TTR1

glutaredoxin

YDR529C

QCR7

ubiquinol--cytochrome-c reductase subunit 7

YDR536W

STL1

member of the sugar permease family

YEL002C

WBP1

oligosaccharyl transferase beta subunit precursor

YEL020W-A

TIM9

essential subunit of the TIM22-complex for mitochondrial protein import

YEL024W

RIP1

ubiquinol--cytochrome-c reductase iron-sulfur protein precursor

YEL030W

ECM10

heat shock protein of HSP70 family

YEL031W

SPF1

P-type ATPase

YEL039C

CYC7

cytochrome-c isoform 2

YEL052W

AFG1

ATPase family gene

YEL061C

CIN8

kinesin-related protein

YER004W

YER004W

similarity to hypothetical E.coli and C.elegans proteins

YER008C

SEC3

component of exocyst complex

YER014W

HEM14

protoporphyrinogen oxidase, mitochondrial

YER017C

AFG3

protease of the SEC18/CDC48/PAS1 family of ATPases (AAA)

YER024W

YAT2

carnitine O-acetyltransferase

YER048W-A

YER048W-A

similarity to D. melanogaster protein

YER050C

RSM18

component of the mitochondrial ribosomal small subunit

YER069W

ARG5,6

acetylglutamate kinase and acetylglutamyl-phosphate reductase

YER073W

ALD5

aldehyde dehydrogenase (NAD+), mitochondrial

YER074W

RPS24A

40s small subunit ribosomal protein S24.e

YER080W

YER080W

hypothetical protein

YER086W

ILV1

anabolic serine and threonine dehydratase precursor

YER087W

YER087W

similarity to E.coli prolyl-tRNA synthetase

YER096W

SHC1

sporulation specific protein

YER102W

RPS8B

ribosomal protein S8.e

YER117W

RPL23B

ribosomal protein L23.e

YER120W

SCS2

required for inositol metabolism

YER141W

COX15

cytochrome oxidase assembly factor

YER154W

OXA1

cytochrome oxidase biogenesis protein

YER178W

PDA1

pyruvate dehydrogenase (lipoamide) alpha chain precursor

YER182W

YER182W

similarity to hypothetical protein SPAC3A12.08 - S. pombe

YFL005W

SEC4

GTP-binding protein of the ras superfamily

YFL016C

MDJ1

heat shock protein - chaperone

YFL018C

LPD1

dihydrolipoamide dehydrogenase precursor

YFL030W

YFL030W

similarity to several transaminases

YFR011C

YFR011C

ochre suppressor tyr-tRNA

YFR033C

QCR6

ubiquinol--cytochrome-c reductase 17K protein

YFR044C

YFR044C

similarity to hypothetical protein YBR281c

YFR049W

YMR31

ribosomal protein, mitochondrial

YGL008C

PMA1

H+-transporting P-type ATPase, major isoform, plasma membrane

YGL031C

RPL24A

60S large subunit ribosomal protein L24.e.A

YGL055W

OLE1

stearoyl-CoA desaturase

YGL068W

YGL068W

strong similarity to Cricetus mitochrondial ribosomal L12 protein

YGL076C

RPL7A

60S large subunit ribosomal protein L7.e.A

YGL092W

NUP145

nuclear pore protein

YGL103W

RPL28

60S large subunit ribosomal protein L27a.e

YGL107C

RMD9

strong similarity to hypothetical protein YBR238c

YGL119W

ABC1

ubiquinol--cytochrome-c reductase complex assembly protein

YGL129C

RSM23

similarity to S.pombe hypothetical protein SPBC29A3.15C - putative mitochondrial function

YGL147C

RPL9A

ribosomal protein L9.e

YGL156W

AMS1

alpha-mannosidase

YGL187C

COX4

cytochrome-c oxidase chain IV

YGL191W

COX13

cytochrome-c oxidase chain VIa

YGL256W

ADH4

alcohol dehydrogenase IV

YGR012W

YGR012W

similarity to E.nidulans cysteine synthase

YGR027C

RPS25A

ribosomal protein S25.e.c7

YGR032W

GSC2

1,3-beta-D-glucan synthase subunit

YGR082W

TOM20

mitochondrial outer membrane import receptor subunit, 20 kD

YGR084C

MRP13

ribosomal protein of the small subunit, mitochondrial

YGR086C

PIL1

strong similarity to hypothetical protein YPL004c

YGR091W

PRP31

pre-mRNA splicing protein

YGR094W

VAS1

valyl-tRNA synthetase

YGR112W

SHY1

SURF homologue protein

YGR130C

YGR130C

weak similarity to myosin heavy chain proteins

YGR132C

PHB1

prohibitin, antiproliferative protein

YGR138C

TPO2

polyamine transport protein

YGR148C

RPL24B

60S large subunit ribosomal protein L24.e.B

YGR157W

CHO2

phosphatidylethanolamine N-methyltransferase

YGR165W

MRPS35

similarity to PIR:T39444 hypothetical protein SPBC14C8.16c S. pombe

YGR174C

CBP4

ubiquinol--cytochrome-c reductase assembly factor

YGR192C

TDH3

glyceraldehyde-3-phosphate dehydrogenase 3

YGR193C

PDX1

pyruvate dehydrogenase complex protein X

YGR204W

ADE3

C1-tetrahydrofolate synthase (trifunctional enzyme),cytoplasmic

YGR207C

ETF-BETA

electron-transferring flavoprotein, beta chain

YGR214W

RPS0A

40S ribosomal protein p40 homolog A

YGR215W

RSM27

strong similarity to hypothetical S. pombe protein

YGR220C

MRPL9

ribosomal protein YmL9, mitochondrial

YGR231C

PHB2

Prohibitin

YGR234W

YHB1

flavohemoglobin

YGR235C

YGR235C

hypothetical protein

YGR238C

KEL2

involved in cell fusion and morphogenesis

YGR240C

PFK1

6-phosphofructokinase, alpha subunit

YGR244C

LSC2

succinate-CoA ligase beta subunit

YGR254W

ENO1

enolase I (2-phosphoglycerate dehydratase)

YGR281W

YOR1

ATP-binding cassette transporter protein

YGR286C

BIO2

biotin synthetase

YHL004W

MRP4

ribosomal protein of the small subunit, mitochondrial

YHL021C

YHL021C

weak similarity to Pseudomonas gamma-butyrobetaine hydroxylase

YHL030W

ECM29

involved in cell wall biogenesis and architecture

YHR001W-A

QCR10

ubiquinol--cytochrome-c reductase 8.5 kDa subunit

YHR005C-A

MRS11

subunit of the Tim22-complex

YHR007C

ERG11

cytochrome P450 lanosterol 14a-demethylase

YHR008C

SOD2

superoxide dismutase (Mn) precursor, mitochondrial

YHR024C

MAS2

processing peptidase, catalytic 53kDa (alpha) subunit, mitochondrial

YHR031C

RRM3

DNA helicase involved in rDNA replication and Ty1 transposition

YHR037W

PUT2

1-pyrroline-5-carboxylate dehydrogenase

YHR038W

FIL1

Killed in Mutagen, sensitive to Diepoxybutane and/or Mitomycin C

YHR039C

MSC7

similarity to aldehyde dehydrogenases

YHR051W

COX6

cytochrome-c oxidase subunit VI

YHR063C

PAN5

weak similarity to translational activator CBS2

YHR117W

TOM71

protein with similarity to Tom70p/Mas70p

YHR119W

SET1

involved in chromatin-mediated gene regulation

YHR141C

RPL42B

ribosomal protein L36a.e

YHR147C

MRPL6

ribosomal protein of the large subunit, mitochondrial

YHR190W

ERG9

farnesyl-diphosphate farnesyltransferase

YHR198C

YHR198C

strong similarity to hypothetical protein YHR199c

YHR199C

YHR199C

strong similarity to hypothetical protein YHR198c

YHR203C

RPS4B

ribosomal protein S4.e.c8

YHR208W

BAT1

branched chain amino acid aminotransferase, mitochondrial

YIL022W

TIM44

mitochondrial inner membrane import receptor subunit

YIL042C

YIL042C

similarity to rat branched-chain alpha-ketoacid dehydrogenase kinase

YIL051C

MMD1

required for maintenance of mitochondrial DNA

YIL065C

FIS1

protein involved in mitochondrial division

YIL069C

RPS24B

40S small subunit ribosomal protein S24.e

YIL070C

MAM33

mitochondrial acidic matrix protein

YIL093C

RSM25

weak similarity to S.pombe hypothetical protein SPBC16A3

YIL094C

LYS12

homo-isocitrate dehydrogenase

YIL098C

FMC1

Formation of Mitochondrial Cytochromes

YIL111W

COX5B

cytochrome-c oxidase chain Vb

YIL124W

AYR1

1-Acyldihydroxyacetone-phosphate reductase

YIL125W

KGD1

2-oxoglutarate dehydrogenase complex E1 component

YIL136W

OM45

protein of the outer mitochondrial membrane

YIL149C

MLP2

involved in translocation of macromolecules between the nucleoplasm and the NPC

YIL155C

GUT2

glycerol-3-phosphate dehydrogenase, mitochondrial

YIL157C

YIL157C

weak similarity to PIR:T39578 hypothetical protein SPBC16E9.03c S. pombe

YIR006C

PAN1

actin-cytoskeleton assembly protein

YJL021C

BBC1

shows synthetic fitness defect with bni1 mutants and associates with the Bee1p-Vrp1p-Myo3/5p complex

YJL034W

KAR2

nuclear fusion protein

YJL045W

YJL045W

strong similarity to succinate dehydrogenase flavoprotein

YJL052W

TDH1

glyceraldehyde-3-phosphate dehydrogenase 1

YJL054W

TIM54

translocase for the insertion of proteins into the mitochondrial inner membrane

YJL060W

BNA3

similarity to kynurenine aminotransferase and glutamine-phenylpyruvate transaminase

YJL063C

MRPL8

ribosomal protein L17, mitochondrial

YJL066C

MPM1

hypothetical protein

YJL096W

MRPL49

ribosomal protein YmL49, mitochondrial

YJL130C

URA2

multifunctional pyrimidine biosynthesis protein

YJL166W

QCR8

ubiquinol--cytochrome-c reductase chain VIII

YJL168C

SET2

enhancer of zeste-like

YJL171C

YJL171C

similarity to YBR162c

YJL177W

RPL17B

60s large subunit ribosomal protein L17.e

YJL191W

RPS14B

40S small subunit ribosomal protein S14.e.B

YJL200C

YJL200C

strong similarity to aconitate hydratase

YJL208C

NUC1

nuclease, mitochondrial

YJR009C

TDH2

glyceraldehyde-3-phosphate dehydrogenase 2

YJR016C

ILV3

dihydroxy-acid dehydratase

YJR042W

NUP85

nuclear pore protein

YJR045C

SSC1

mitochondrial heat shock protein 70-related protein

YJR048W

CYC1

cytochrome-c isoform 1

YJR059W

PTK2

involved in polyamine uptake

YJR077C

MIR1

phosphate transport protein, mitochondrial (MCF)

YJR080C

YJR080C

hypothetical protein

YJR090C

GRR1

required for glucose repression and for glucose and cation transport

YJR095W

SFC1

succinate-fumarate transporter

YJR101W

RSM26

weak similarity to superoxide dismutases

YJR104C

SOD1

copper-zinc superoxide dismutase

YJR113C

RSM7

similarity to bacterial, chloroplast and mitochondrial ribosomal protein S7

YJR121W

ATP2

F1F0-ATPase complex, F1 beta subunit

YJR143C

PMT4

dolichyl-phosphate-mannose--protein O-mannosyl transferase

YJR144W

MGM101

mitochondrial genome maintenance protein

YJR145C

RPS4A

ribosomal protein S4.e.c10

YJR148W

BAT2

branched chain amino acid aminotransferase, cytosolic

YKL016C

ATP7

F1F0-ATPase complex, FO D subunit

YKL027W

YKL027W

similarity to E.coli molybdopterin-converting factor chlN

YKL029C

MAE1

malic enzyme

YKL040C

NFU1

iron homeostasis

YKL085W

MDH1

malate dehydrogenase precursor, mitochondrial

YKL120W

OAC1

similarity to mitochondrial uncoupling proteins (MCF)

YKL135C

APL2

AP-1 complex subunit, beta1-adaptin, 82 KD

YKL141W

SDH3

cytochrome b560 subunit of respiratory complex II

YKL148C

SDH1

succinate dehydrogenase flavoprotein precursor

YKL150W

MCR1

cytochrome-b5 reductase

YKL152C

GPM1

phosphoglycerate mutase

YKL157W

APE2

aminopeptidase yscII

YKL171W

YKL171W

weak similarity to ser/thr protein kinase

YKL192C

ACP1

mitochonrial acyl-carrier protein

YKL195W

YKL195W

similarity to rabbit histidine-rich calcium-binding protein

YKL203C

TOR2

phosphatidylinositol 3-kinase

YKL212W

SAC1

recessive suppressor of secretory defect

YKL215C

YKL215C

similarity to P. aeruginosa hyuA and hyuB

YKL217W

JEN1

carboxylic acid transporter protein

YKR016W

YKR016W

weak similarity to mysoin heavy chain proteins

YKR028W

SAP190

Sit4p-associated protein

YKR049C

YKR049C

hypothetical protein

YKR065C

YKR065C

similarity to hypothetical protein S. pombe

YKR066C

CCP1

cytochrome-c peroxidase precursor

YKR070W

YKR070W

strong similarity to S. pombe phosphatidyl synthase

YKR085C

MRPL20

ribosomal protein YmL20, mitochondrial

YKR095W

MLP1

myosin-like protein related to Uso1p

YLL021W

SPA2

involved in cell polarity

YLL041C

SDH2

succinate dehydrogenase iron-sulfur protein subunit

YLR008C

YLR008C

similarity to hypothetical protein YNL328c

YLR038C

COX12

cytochrome-c oxidase, subunit VIB

YLR056W

ERG3

C-5 sterol desaturase

YLR069C

MEF1

translation elongation factor G, mitochondrial

YLR075W

RPL10

60S large subunit ribosomal protein

YLR089C

YLR089C

strong similarity to alanine transaminases

YLR106C

MDN1

similarity to Kaposi's sarcoma-associated herpes-like virus ORF73 homolog gene

YLR108C

YLR108C

strong similarity to YDR132c

YLR131C

ACE2

metallothionein expression activator

YLR163C

MAS1

mitochondrial processing peptidase

YLR174W

IDP2

isocitrate dehydrogenase, cytosolic

YLR188W

MDL1

ATP-binding cassette transporter family member

YLR201C

YLR201C

similarity to hypothetical S. pombe protein

YLR239C

LIP2

lipoic acid ligase

YLR259C

HSP60

heat shock protein - chaperone, mitochondrial

YLR295C

ATP14

F1F0-ATPase complex, subunit h

YLR304C

ACO1

aconitate hydratase

YLR309C

IMH1

involved in vesicular transport

YLR312W-A

MRPL15

ribosomal protein of the large subunit, mitochondrial

YLR325C

RPL38

60S large subunit ribosomal protein

YLR342W

FKS1

1,3-beta-D-glucan synthase, catalytic subunit

YLR348C

DIC1

dicarboxylate carrier protein

YLR355C

ILV5

ketol-acid reducto-isomerase

YLR369W

SSQ1

mitochondrial heat shock protein 70

YLR393W

ATP10

F1F0 ATPase complex assembly protein

YLR395C

COX8

cytochrome-c oxidase chain VIII

YLR433C

CNA1

calcineurin B, catalytic subunit

YLR439W

MRPL4

ribosomal protein, mitochondrial

YLR441C

RPS1A

ribosomal protein S3a.e

YML002W

YML002W

hypothetical protein

YML008C

ERG6

S-adenosyl-methionine delta-24-sterol-c-methyltransferase

YML026C

RPS18B

ribosomal protein S18.e.c13

YML030W

YML030W

weak similarity to CG9921 D. melanogaster

YML042W

CAT2

carnitine O-acetyltransferase

YML054C

CYB2

lactate dehydrogenase cytochrome b2

YML063W

RPS1B

ribosomal protein S3a.e

YML072C

YML072C

similarity to YOR3141c and YNL087w

YML078W

CPR3

cyclophilin (peptidylprolyl isomerase), mitochondrial

YML081C-A

ATP18

gene for subunit i/j of the mitochondrial F1F0-ATP synthase

YML086C

ALO1

D-arabinono-1,4-lactone oxidase

YML091C

RPM2

ribonuclease P precursor, mitochondrial

YML103C

NUP188

nuclear pore protein

YML107C

YML107C

hypothetical protein

YML110C

COQ5

ubiquinone biosynthesis, methyltransferase

YML120C

NDI1

NADH-ubiquinone-6 oxidoreductase

YML123C

PHO84

high-affinity inorganic phosphate/H+ symporter

YMR008C

PLB1

phospholipase B (lysophospholipase)

YMR011W

HXT2

high-affinity hexose transporter

YMR024W

MRPL3

ribosomal protein of the large subunit, mitochondrial

YMR056C

AAC1

ADP/ATP carrier protein (MCF)

YMR062C

ECM40

acetylornithine acetyltransferase

YMR072W

ABF2

high mobility group protein

YMR083W

ADH3

alcohol dehydrogenase III

YMR089C

YTA12

protease of the SEC18/CDC48/PAS1 family of ATPases (AAA)

YMR108W

ILV2

acetolactate synthase

YMR110C

YMR110C

similarity to aldehyde dehydrogenase

YMR115W

YMR115W

similarity to YKL133c

YMR124W

YMR124W

weak similarity to YLR031w

YMR145C

NDE1

mitochondrial cytosolically directed NADH dehydrogenase

YMR158W

MRPS8

weak similarity to E.coli ribosomal S8 protein

YMR162C

DNF3

similarity to ATPases

YMR165C

SMP2

involved in plasmid maintenance, respiration and cell proliferation

YMR186W

HSC82

heat shock protein

YMR189W

GCV2

glycine decarboxylase P subunit

YMR193W

MRPL24

ribosomal protein of the large subunit, mitochondrial

YMR203W

TOM40

forms the hydrophilic channel of the mitochondrial import pore for preproteins

YMR241W

YHM2

yeast suppressor gene of HM (mitochondrial histone) mutant (abf2)

YMR256C

COX7

cytochrome-c oxidase, subunit VII

YMR266W

RSN1

similarity to A.thaliana hyp1 protein

YMR286W

MRPL33

ribosomal protein of the large subunit, mitochondrial

YMR296C

LCB1

serine C-palmitoyltransferase subunit

YMR301C

ATM1

ATP-binding cassette transporter protein, mitochondrial

YMR302C

PRP12

involved in early maturation of pre-rRNA

YMR307W

GAS1

glycophospholipid-anchored surface glycoprotein

YNL005C

MRP7

ribosomal protein YmL2 precursor, mitochondrial

YNL009W

IDP3

isocitrate dehydrogenase, NADP-dependent

YNL026W

YNL026W

similarity to S.pombe hypothetical protein

YNL030W

HHF2

histone H4

YNL031C

HHT2

histone H3

YNL037C

IDH1

isocitrate dehydrogenase (NAD+) subunit 1, mitochondrial

YNL040W

YNL040W

weak similarity to M.genitalium alanine--tRNA ligase

YNL052W

COX5A

cytochrome-c oxidase chain V.A precursor

YNL055C

POR1

mitochondrial outer membrane porin

YNL058C

YNL058C

similarity to YIL117c

YNL067W

RPL9B

ribosomal protein L9.e.c14

YNL070W

TOM7

mitochondrial outer membrane import receptor subunit, 7 kD

YNL071W

LAT1

dihydrolipoamide S-acetyltransferase

YNL100W

YNL100W

hypothetical protein

YNL104C

LEU4

2-isopropylmalalate synthase

YNL121C

TOM70

mitochondrial outer membrane  specialized import receptor

YNL131W

TOM22

mitochondrial outer membrane import receptor complex subunit

YNL137C

NAM9

ribosomal protein, mitochondrial

YNL142W

MEP2

high affinity low capacity ammonia permease

YNL163C

RIA1

translation elongation factor eEF4

YNL168C

YNL168C

similarity to C.elegans ZK688.3 protein and E.coli hpcEp

YNL169C

PSD1

phosphatidylserine decarboxylase 1

YNL178W

RPS3

ribosomal protein S3.e

YNL185C

MRPL19

ribosomal protein of the large subunit, mitochondrial

YNL197C

WHI3

involved in regulation of cell size

YNL239W

LAP3

member of the GAL regulon

YNL248C

RPA49

DNA-directed RNA polymerase A (I) chain, 46 kDa

YNL252C

MRPL17

ribosomal protein of the large subunit (YmL30), mitochondrial

YNL258C

DSL1

hypothetical protein

YNL262W

POL2

DNA-directed DNA polymerase epsilon, catalytic subunit A

YNL284C

MRPL10

ribosomal protein of the large subunit, mitochondrial

YNL306W

MRPS18

ribosomal protein of the small subunit, mitochondrial

YNL309W

STB1

Sin3p binding protein

YNL315C

ATP11

F1F0-ATPase complex assembly protein

YNL323W

LEM3

similarity to Ycx1p

YNR001C

CIT1

citrate (si)-synthase, mitochondrial

YNR017W

MAS6

mitochondrial inner membrane import translocase subunit

YNR018W

YNR018W

similarity to TRCDSEMBL:SPAC1565_1 hypothetical protein S. pombe

YNR022C

MRPL50

weak similarity to protein phosphatases

YOL021C

DIS3

3'->5' exoribonuclease required for 3' end formation of 5.8S rRNA

YOL027C

MDM38

similarity to YPR125w

YOL040C

RPS15

40S small subunit ribosomal protein

YOL053W

YOL053W

hypothetical protein

YOL070C

YOL070C

hypothetical protein

YOL071W

EMI5

similarity to hypothetical S. pombe protein

YOL077W-A

ATP19

subunit K of the dimeric form of mitochondrial F1F0-ATP synthase

YOL109W

ZEO1

weak similarity to G.hirsutum embryonic abundant protein D-7

YOL115W

TRF4

topoisomerase I-related protein

YOL140W

ARG8

acetylornithine aminotransferase

YOR020C

HSP10

chaperonin, mitochondrial

YOR027W

STI1

stress-induced protein

YOR035C

SHE4

required for mother cell-specific gene expression

YOR040W

GLO4

glyoxalase II (hydroxyacylglutathione hydrolase)

YOR063W

RPL3

60S large subunit ribosomal protein L3.e

YOR065W

CYT1

cytochrome-c1

YOR092W

ECM3

involved in cell wall biogenesis and architecture

YOR096W

RPS7A

ribosomal protein

YOR100C

CRC1

mitochondrial carnitine carrier, member of the mitochondrial carrier (MCF) family

YOR108W

LEU9

strong similarity to Leu4p

YOR131C

YOR131C

weak similarity to E.coli hypothetical 27K protein

YOR136W

IDH2

isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial

YOR142W

LSC1

succinate-CoA ligase alpha subunit

YOR153W

PDR5

pleiotropic drug resistance protein

YOR158W

PET123

ribosomal protein, mitochondrial

YOR176W

HEM15

ferrochelatase precursor

YOR187W

TUF1

translation elongation factor TU, mitochondrial

YOR201C

PET56

rRNA (guanosine-2'-O-)-methyltransferase

YOR211C

MGM1

dynamin-like protein

YOR215C

YOR215C

similarity to M.xanthus hypothetical protein

YOR221C

MCT1

malonyl-CoA:ACP transferase

YOR222W

ODC2

similarity to ADP/ATP carrier proteins

YOR230W

WTM1

transcriptional modulator

YOR232W

MGE1

heat shock protein - chaperone

YOR249C

APC5

component of the anaphase-promoting complex

YOR251C

YOR251C

similarity to thiosulfate sulfurtransferases

YOR254C

SEC63

ER protein-translocation complex subunit

YOR271C

YOR271C

strong similarity to Rattus tricarboxylate carrier

YOR286W

YOR286W

similarity to D.melanogaster heat shock protein 67B2

YOR317W

FAA1

long-chain-fatty-acid--CoA ligase

YOR334W

MRS2

RNA splicing protein and member of the mitochondrial carrier family (MCF)

YOR354C

MSC6

weak similarity to genomic sequence for A. thaliana

YOR356W

YOR356W

strong similarity to human electron transfer flavoprotein-ubiquinone oxidoreductase

YOR374W

ALD4

aldehyde dehydrogenase, mitochondrial

YPL004C

LSP1

strong similarity to YGR086c

YPL022W

RAD1

component of the nucleotide excision repairosome

YPL036W

PMA2

H+-transporting P-type ATPase, minor isoform, plasma membrane

YPL043W

NOP4

nucleolar protein

YPL058C

PDR12

multidrug resistance transporter

YPL059W

GRX5

member of the subfamily of yeast glutaredoxins (Grx3, Grx4, and Grx5)

YPL063W

TIM50

similarity to hypothetical protein YLR019w, YLL010c and S.pombe hypothetical protein SPAC2F7.02c

YPL078C

ATP4

F1F0-ATPase complex, F0 subunit B

YPL090C

RPS6A

ribosomal protein S6.e

YPL091W

GLR1

glutathione reductase (NADPH)

YPL097W

MSY1

tyrosyl-tRNA synthetase

YPL099C

YPL099C

weak similarity to Sulfolobus  hypothetical protein

YPL104W

MSD1

aspartate--tRNA ligase, mitochondrial

YPL106C

SSE1

heat shock protein of HSP70 family

YPL118W

MRP51

mitochondrial ribosomal protein of the small subunit

YPL120W

VPS30

involved in vacuolare protein sorting and autophagy

YPL131W

RPL5

60S large subunit ribosomal protein L5.e

YPL132W

COX11

cytochrome-c oxidase assembly protein

YPL134C

ODC1

similarity to ADP,ATP carrier proteins

YPL167C

REV3

DNA-directed DNA polymerase zeta subunit

YPL173W

MRPL40

ribosomal protein of the large subunit (YmL40), mitochondrial

YPL174C

NIP100

component of the dynactin complex

YPL188W

POS5

similarity to Utr1p and YEL041w

YPL198W

RPL7B

60S large subunit ribosomal protein

YPL215W

CBP3

required for assembly of cytochrome bc1 complex

YPL262W

FUM1

fumarate hydratase

YPL265W

DIP5

dicarboxylic amino acid permease

YPL270W

MDL2

ATP-binding cassette (ABC) transporter family member

YPL271W

ATP15

F1F0-ATPase complex, F1 epsilon subunit

YPR001W

CIT3

citrate (si)-synthase, mitochondrial

YPR002W

PDH1

similarity to B.subtilis mmgE protein

YPR004C

YPR004C

strong similarity to electron transfer flavoproteins alpha chain

YPR006C

ICL2

non-functional isocitrate lyase

YPR020W

ATP20

subunit G of the dimeric form of mitochondrial F1F0-ATP Synthase

YPR024W

YME1

protease of the SEC18/CDC48/PAS1 family of ATPases (AAA)

YPR026W

ATH1

acid trehalase, vacuolar

YPR035W

GLN1

glutamate--ammonia ligase

YPR052C

NHP6A

nonhistone chromosomal protein related to mammalian HMG1

YPR058W

YMC1

mitochondrial carrier protein (MCF)

YPR067W

ISA2

mitochondrial protein required for iron metabolism

YPR080W

TEF1

translation elongation factor eEF1 alpha-A chain, cytosolic

YPR100W

MRPL51

weak similarity to C.elegans hypothetical protein CEC25A1

YPR115W

YPR115W

similarity to probable transcription factor Ask10p, and to YNL047c and YIL105c

YPR125W

MRS7

suppressor of mrs2-1 mutation

YPR133W-A

TOM5

mitochondrial outer membrane protein

YPR135W

CTF4

DNA-directed DNA polymerase alpha-binding protein

YPR164W

KIM3

drug resistance

YPR183W

DPM1

dolichyl-phosphate beta-D-mannosyltransferase

YPR191W

QCR2

ubiquinol--cytochrome-c reductase 40KD chain II